Comments on: metaPrDOS: Predicting Disordered Regions in Proteins http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/ Protein Crystallography there is an Easier Way Wed, 18 Jan 2012 10:14:22 -0500 http://wordpress.org/?v=2.8.5 hourly 1 By: Sophia http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/comment-page-1/#comment-1543 Sophia Fri, 22 Jan 2010 02:14:13 +0000 http://www.P212121.com/?p=9085#comment-1543 Hi Sean, oh, guess what? After about 5 hours, I finally got something! Seems to work. You may want to resubmit. (Maybe there was a server backlog?) Hi Sean,

oh, guess what? After about 5 hours, I finally got something! Seems to work. You may want to resubmit. (Maybe there was a server backlog?)

]]> By: Sean http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/comment-page-1/#comment-1542 Sean Fri, 22 Jan 2010 00:59:11 +0000 http://www.P212121.com/?p=9085#comment-1542 Hi Sophia, Yeah, I haven't still haven't received a reply either. Hi Sophia,

Yeah, I haven’t still haven’t received a reply either.

]]> By: Sophia http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/comment-page-1/#comment-1541 Sophia Fri, 22 Jan 2010 00:54:07 +0000 http://www.P212121.com/?p=9085#comment-1541 Hi Sean, I tried the same today, and still nothing, 3 hours later. I tried the link above for the Weizmann FoldIndex algorithm, and it works beautifully. I like the colored sequence. (Thanks, Todd!) Seems to work well. Hi Sean,

I tried the same today, and still nothing, 3 hours later. I tried the link above for the Weizmann FoldIndex algorithm, and it works beautifully. I like the colored sequence. (Thanks, Todd!) Seems to work well.

]]> By: Sean http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/comment-page-1/#comment-1527 Sean Wed, 20 Jan 2010 01:10:32 +0000 http://www.P212121.com/?p=9085#comment-1527 Hi Todd, Thanks for the heads up! I will have to check it out. I still have not heard back from metaPrDOS :( Hi Todd,

Thanks for the heads up! I will have to check it out.

I still have not heard back from metaPrDOS :(

]]> By: Todd http://www.P212121.com/2010/01/18/metaprdos-predicting-disordered-regions-in-proteins/comment-page-1/#comment-1525 Todd Tue, 19 Jan 2010 14:33:17 +0000 http://www.P212121.com/?p=9085#comment-1525 We've had very good success with the FoldIndex algorithm. http://bip.weizmann.ac.il/fldbin/findex Just input your protein sequence (single letter code) and within milliseconds, you have your answer in a nice plot! We had such success with that algorithm that we integrated it into a sequence alignment analysis program to give averaged disorder/order predictions. It has been very useful for construct design. We’ve had very good success with the FoldIndex algorithm.

http://bip.weizmann.ac.il/fldbin/findex

Just input your protein sequence (single letter code) and within milliseconds, you have your answer in a nice plot!

We had such success with that algorithm that we integrated it into a sequence alignment analysis program to give averaged disorder/order predictions. It has been very useful for construct design.

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